Prof David Lee

David Lee

Professor of Cell & Tissue Engineering

School of Engineering and Materials Science
Queen Mary University of London

Research

Mechanobiology, Stem cell biology, Circadian biology, Musculoskeletal, Energy metabolism, Cartilage

Underpinning Bioengineering, Cancer Models, Cardiovascular Models, Musculoskeletal Models

Publications

Publications of specific relevance to Predictive in vitro Models

2022

Heywood HK, Thorpe SD, Jeropoulos RM, Caton PW and Lee DA (2022). Modulation of sirtuins during monolayer chondrocyte culture influences cartilage regeneration upon transfer to a 3D culture environment. Frontiers Media  Frontiers in Bioengineering and Biotechnology  vol. 10, 10.3389/fbioe.2022.971932
Heywood HK, Gardner L, Knight MM and Lee DA (2022). Oscillations of the circadian clock protein, BMAL-1, align to daily cycles of mechanical stimuli: a novel means to integrate biological time within predictive in vitro model systems. Springer Nature  In Vitro Models  1-8. 10.1007/s44164-022-00032-x
Brookes O, Thorpe SD, Evans OR, Keeling MC and Lee DA (2022). Covariation of Pluripotency Markers and Biomechanical Properties in Mouse Embryonic Stem Cells. Frontiers  Frontiers in Cell and Developmental Biology  vol. 10, 10.3389/fcell.2022.858884

2021

Lachowski D, Cortes E, Matellan C, Rice A, Lee DA, Thorpe SD and del Río Hernández AE (2021). G Protein-Coupled Estrogen Receptor Regulates Actin Cytoskeleton Dynamics to Impair Cell Polarization. Frontiers Media  Frontiers in Cell and Developmental Biology  vol. 8, 592628-592628. 10.3389/fcell.2020.592628

2020

Rice A, Cortes E, Lachowski D, Oertle P, Matellan C, Thorpe SD, Ghose R, Wang H, Lee DA, Plodinec M and Del Río Hernández AE (2020). GPER activation inhibits cancer cell mechanotransduction and basement membrane invasion via RhoA. Mdpi Ag  Cancers  vol. 12, (2) 10.3390/cancers12020289
Thorpe S, Chronopoulos A, Cortes E, Lachowski D, Rice A, Mykuliak V, Róg T, Lee D, Hytonen V and del Río Hernández A (2020). Syndecan-4 tunes cell mechanics by activating the kindlin-integrin-RhoA pathway. Nature Research  Nature Materials  10.1038/s41563-019-0567-1

2018

Cortes E, Lachowski D, Rice A, THORPE SD, Robinson B, Yeldag G, LEE DA, Ghemtio L, Rombouts K and del Río Hernández AE (2018). Tamoxifen mechanically deactivates hepatic stellate cells via the G protein-coupled estrogen receptor. Springer Nature [Academic Journals On Nature.Com]  Oncogene  10.1038/s41388-018-0631-3
Cortes E, Lachowski D, Robinson B, Sarper M, Teppo JS, Thorpe SD, Lieberthal TJ, Iwamoto K, Lee DA, Okada‐Hatakeyama M, Varjosalo MT and Hernández AER (2018). Tamoxifen mechanically reprograms the tumor microenvironment via HIF‐1A and reduces cancer cell survival. Springer Nature  Embo Reports  vol. 20, (1) 10.15252/embr.201846557
Cortes E, Sarper M, Robinson B, Lachowski D, Chronopoulos A, Thorpe SD, Lee DA and Hernández AER (2018). GPER is a mechanoregulator of pancreatic stellate cells and the tumor microenvironment. Springer Nature  Embo Reports  vol. 20, (1) 10.15252/embr.201846556
Cortes E, Lachowski D, Rice A, Chronopoulos A, Robinson B, THORPE SD, LEE DA, Possamai LA, Wang H, Pinato DJ and del Rio Hernández AE (2018). RAR‐β is downregulated in HCC & cirrhosis and its expression inhibits myosin‐driven activation and durotaxis in hepatic stellate cells. Wiley  Hepatology  10.1002/hep.30193

2017

Elyasigomari V, Lee DA, Screen HRC and SHAHEED MH (2017). Development of a two-stage gene selection method that incorporates a novel hybrid approach using the cuckoo optimization algorithm and harmony search for cancer classification. Journal of Biomedical Informatics  vol. 67, (2017) 11-20. 10.1016/j.jbi.2017.01.016
THORPE SD and Lee DA (2017). Dynamic regulation of nuclear architecture and mechanics—a rheostatic role for the nucleus in tailoring cellular mechanosensitivity. Taylor & Francis  Nucleus  vol. 8, (3) 287-300. 10.1080/19491034.2017.1285988

2016

Heo S-J, Driscoll TP, Thorpe SD, Nerurkar NL, Baker BM, Yang MT, Chen CS, Lee DA and Mauck RL (2016). Differentiation alters stem cell nuclear architecture, mechanics, and mechano-sensitivity. Elife Sciences Publications Ltd  Elife  vol. 5, 10.7554/eLife.18207
Tilwani RK, Vessillier S, Pingguan-Murphy B, Lee DA, Bader DL and Chowdhury TT (2016). Oxygen tension modulates the effects of TNFα in compressed chondrocytes. Inflamm Res  10.1007/s00011-016-0991-5
Heo SJ, Han WM, Szczesny SE, Cosgrove BD, Elliott DM, Lee DA, Duncan RL and Mauck RL (2016). Mechanically Induced Chromatin Condensation Requires Cellular Contractility in Mesenchymal Stem Cells. Biophysical Journal  vol. 111, (4) 864-874. 10.1016/j.bpj.2016.07.006
Heywood HK and Lee DA (2016). Bioenergetic reprogramming of articular chondrocytes by exposure to exogenous and endogenous reactive oxygen species and its role in the anabolic response to low oxygen. Journal of Tissue Engineering and Regenerative Medicine  vol. 11, (8) 2286-2294. 10.1002/term.2126
Sliogeryte K, Botto L, Lee DA and Knight MM (2016). Chondrocyte dedifferentiation increases cell stiffness by strengthening membrane-actin adhesion. Elsevier  Osteoarthritis and Cartilage  vol. 24, (5) 912-920. 10.1016/j.joca.2015.12.007
Lee D (2016). States rights and Australia’s adoption of the statute of Westminster, 1931–1942. Taylor & Francis  History Australia  vol. 13, (2) 258-274. 10.1080/14490854.2016.1186001
Theocharidis G, Drymoussi Z, Kao AP, Barber AH, Lee DA, Braun KM and Connelly JT (2016). Type VI Collagen Regulates Dermal Matrix Assembly and Fibroblast Motility. Elsevier  Journal of Investigative Dermatology  vol. 136, (1) 74-83. 10.1038/jid.2015.352
Theocharidis G, Drymoussi Z, Kao AP, Barber AH, Lee DA, Braun KM and Connelly JT (2016). Type VI Collagen Regulates Dermal Matrix Assembly and Fibroblast Motility. J Invest Dermatol  vol. 136, (1) 74-83. 10.1038/JID.2015.352

2015

Heo S-J, Thorpe SD, Driscoll TP, Duncan RL, Lee DA and Mauck RL (2015). Biophysical Regulation of Chromatin Architecture Instills a Mechanical Memory in Mesenchymal Stem Cells. Springer Nature  Scientific Reports  vol. 5, (1) 10.1038/srep16895
CHEN J, BADER DL, LEE DA and KNIGHT MM (2015). FINITE ELEMENT ANALYSIS OF MECHANICAL DEFORMATION OF CHONDROCYTE TO 2D SUBSTRATE AND 3D SCAFFOLD. World Scientific Publishing  Journal of Mechanics in Medicine and Biology  vol. 15, (05) 10.1142/s0219519415500773

2014

Sliogeryte K, Thorpe SD, Lee DA, Botto L and Knight MM (2014). Stem cell differentiation increases membrane-actin adhesion regulating cell blebability, migration and mechanics. Springer Nature  Scientific Reports  vol. 4, (1) 10.1038/srep07307
Irianto J, Lee DA and Knight MM (2014). Quantification of chromatin condensation level by image processing. Med Eng Phys  vol. 36, (3) 412-417. 10.1016/j.medengphy.2013.09.006
Heywood HK, Nalesso G, Lee DA and Dell'accio F (2014). Culture expansion in low-glucose conditions preserves chondrocyte differentiation and enhances their subsequent capacity to form cartilage tissue in three-dimensional culture. Biores Open Access  vol. 3, (1) 9-18. 10.1089/biores.2013.0051

2013

Irianto J, Swift J, Martins RP, McPhail GD, Knight MM, Discher DE and Lee DA (2013). Osmotic challenge drives rapid and reversible chromatin condensation in chondrocytes. Biophys J  vol. 104, (4) 759-769. 10.1016/j.bpj.2013.01.006
Pattappa G, Thorpe SD, Jegard NC, Heywood HK, de Bruijn JD and Lee DA (2013). Continuous and Uninterrupted Oxygen Tension Influences the Colony Formation and Oxidative Metabolism of Human Mesenchymal Stem Cells. Tissue Engineering Part C-Methods  vol. 19, (1) 10.1089/ten.tec.2011.0734
Lee D (2013). Reluctant relaxation. Taylor & Francis  History Australia  vol. 10, (3) 149-170. 10.1080/14490854.2013.11668485

2012

Sillitoe I, Cuff AL, Dessailly BH, Dawson NL, Furnham N, Lee D, Lees JG, Lewis TE, Studer RA, Rentzsch R, Yeats C, Thornton JM and Orengo CA (2012). New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures. Oxford University Press (Oup)  Nucleic Acids Research  vol. 41, (D1) d490-d498. 10.1093/nar/gks1211
Chen J, Irianto J, Inamdar S, Pravincumar P, Lee DA, Bader DL and Knight MM (2012). Cell mechanics, structure, and function are regulated by the stiffness of the three-dimensional microenvironment. Biophys J  vol. 103, (6) 1188-1197. 10.1016/j.bpj.2012.07.054
Bonzani IC, Campbell JJ, Knight MM, Williams A, Lee DA, Bader DL and Stevens MM (2012). Dynamic compressive strain influences chondrogenic gene expression in human periosteal cells: a case study. J Mech Behav Biomed Mater  vol. 11, 72-81. 10.1016/j.jmbbm.2011.06.015
Branford OA, Lee DA, Bader DL and Grobbelaar AO (2012). The mechanics of flexor tendon adhesions. Journal of Hand Surgery: European Volume  vol. 37, (6) 555-563. 10.1177/1753193411432675
Branford OA, Lee DA, Rolfe KJ and Grobbelaar AO (2012). The attachment of intrinsic and extrinsic, mobilized and immobilized adhesion cells to collagen and fibronectin. Journal of Hand Surgery: European Volume  vol. 37, (6) 564-572. 10.1177/1753193411428994
Lee D, Smallbone K, Dunn WB, Murabito E, Winder CL, Kell DB, Mendes P and Swainston N (2012). Improving metabolic flux predictions using absolute gene expression data. Springer Nature  Bmc Systems Biology  vol. 6, (1) 10.1186/1752-0509-6-73
Maeda E, Ye S, Wang W, Bader DL, Knight MM and Lee DA (2012). Gap junction permeability between tenocytes within tendon fascicles is suppressed by tensile loading. Biomechanics and Modeling in Mechanobiology  vol. 11, (3-4) 439-447. 10.1007/s10237-011-0323-1
Lee D (2012). Stanley Melbourne Bruce in London, 1938–41. Taylor & Francis  The Journal of Imperial & Commonwealth History  vol. 40, (1) 45-65. 10.1080/03086534.2012.656489
Gutowski IA, Lee D, de Bruyn JR and Frisken BJ (2012). Scaling and mesostructure of Carbopol dispersions. Springer Nature  Rheologica Acta  vol. 51, (5) 441-450. 10.1007/s00397-011-0614-6
Hosny NA, Lee DA and Knight MM (2012). Single photon counting fluorescence lifetime detection of pericellular oxygen concentrations. J Biomed Opt  vol. 17, (1) 10.1117/1.JBO.17.1.016007
Martins RP, Finan JD, Guilak F and Lee DA (2012). Mechanical regulation of nuclear structure and function. Annu Rev Biomed Eng  vol. 14, 431-455. 10.1146/annurev-bioeng-071910-124638

2011

Jaimes N, Scope A, Welzel J, Wang KX, Lee DA, Siegel DM and Marghoob AA (2011). White Globules in Melanocytic Neoplasms: In Vivo and Ex Vivo Characteristics. Wolters Kluwer  Dermatologic Surgery  vol. 38, (1) 128-132. 10.1111/j.1524-4725.2011.02198.x
Pattappa G, Heywood HK, de Bruijn JD and Lee DA (2011). The metabolism of human mesenchymal stem cells during proliferation and differentiation. J Cell Physiol  vol. 226, (10) 2562-2570. 10.1002/jcp.22605
Lewinsohn AD, Anssari-Benham A, Lee DA, Taylor PM, Chester AH, Yacoub MH and Screen HRC (2011). Anisotropic strain transfer through the aortic valve and its relevance to the cellular mechanical environment. Proc Inst Mech Eng H  vol. 225, (8) 821-830. 10.1177/0954411911406340
Moses SE, Osborne W, Valappil M, Collin M, Lee D, Waugh S, Jackson G, Parry CM and Crowley B (2011). Extensive oral herpes simplex virus type 1 infection in a haematopoietic stem cell transplant recipient not responding to aciclovir. Elsevier  Journal of Clinical Virology  vol. 52, (2) 67-69. 10.1016/j.jcv.2011.05.015
Lee D, Gutowski IA, Bailey AE, Rubatat L, de Bruyn JR and Frisken BJ (2011). Investigating the microstructure of a yield-stress fluid by light scattering. American Physical Society (Aps)  Physical Review E  vol. 83, (3) 10.1103/physreve.83.031401
Maeda E, Ye S, Wang W, Bader DL, Knight MM and Lee DA (2011). Gap junction permeability between tenocytes within tendon fascicles is suppressed by tensile loading. Biomechanics and Modeling in Mechanobiology  1-9. 10.1007/s10237-011-0323-1
Lewinsohn AD, Anssari-Benham A, Lee DA, Taylor PM, Chester AH, Yacoub MH and Screen HRC (2011). Anisotropic strain transfer through the aortic valve and its relevance to the cellular mechanical environment. P I Mech Eng H  vol. 225, (H8) 821-830. 10.1177/0954411911406340
Martyn SV, Heywood HK, Rockett P, Paine MD, Wang MJ, Dobson PJ, Sheard SJ, Lee DA and Stark JPW (2011). Electrospray deposited fibronectin retains the ability to promote cell adhesion. Journal of Biomedical Materials Research - Part B Applied Biomaterials  vol. 96 B, (1) 110-118. 10.1002/jbm.b.31745
Lee DA, Knight MM, Campbell JJ and Bader DL (2011). Stem cell mechanobiology. J Cell Biochem  vol. 112, (1) 1-9. 10.1002/jcb.22758
Lee D, de Beer TA, Laskowski RA, Thornton JM and Orengo CA (2011). 1,000 structures and more from the MCSG. Springer Nature  Bmc Molecular and Cell Biology  vol. 11, (1) 10.1186/1472-6807-11-2
Lee DA and Siegel DM (2011). Novel devices for diagnosis and treatment. Journal of Drugs in Dermatology  vol. 10, (1) 21-22.
Lee DA, Brand J, Salter D, Akanji O-O and Chowdhury TT (2011). Quantification of mRNA using real-time PCR and Western blot analysis of MAPK events in chondrocyte/agarose constructs. Methods Mol Biol  vol. 695, 77-97. 10.1007/978-1-60761-984-0_6

2010

Pattappa G, Heywood HK, de Bruijn JD and Lee DA (2010). The metabolism of human mesenchymal stem cells during proliferation and differentiation. J Cell Physiol  10.1002/jcp.22605
Maeda E, Fleischmann C, Mein CA, Shelton JC, Bader DL and Lee DA (2010). Functional analysis of tenocytes gene expression in tendon fascicles subjected to cyclic tensile strain. Connective Tissue Research  vol. 51, (6) 434-444. 10.3109/03008201003597056
Heywood HK, Knight MM and Lee DA (2010). Both superficial and deep zone articular chondrocyte subpopulations exhibit the crabtree effect but have different basal oxygen consumption rates. Journal of Cellular Physiology  vol. 223, (3) 630-639. 10.1002/jcp.22061
Lee D (2010). Giving something back. Twist  (22) 28-30.
Ye S, Maeda E, Knight M, Lee D, Bader D and Wang W (2010). A compartment model to evaluate the permeability of gap junctions between tenocytes in tendon fascicles. Faseb Journal  vol. 24, 10.1096/fasebj.24.1_supplement.975.9
Heywood HK and Lee DA (2010). Low oxygen reduces the modulation to an oxidative phenotype in monolayer-expanded chondrocytes. J Cell Physiol  vol. 222, (1) 248-253. 10.1002/jcp.21946

2009

Maeda E, Shelton JC, Bader DL and Lee DA (2009). Effect of intermittent cyclic tensile strain on collagen synthesis by tenocytes in isolated fascicles. Journal of Biomechanical Science and Engineering  vol. 4, (4) 510-517. 10.1299/jbse.4.510
Lee DA, Rentzsch R and Orengo C (2009). GeMMA: functional subfamily classification within superfamilies of predicted protein structural domains. Oxford University Press (Oup)  Nucleic Acids Research  vol. 38, (3) 720-737. 10.1093/nar/gkp1049
Pattappa G, Jegard NC, Lee DA and de Bruijn JD (2009). The effect of oxygen tension on the proliferation and differentiation of human mesenchymal stem cells. European Cells and Materials  vol. 18, (SUPPL. 1)
Campbell JJ, Maeda E, Ye SJ, Wang W and Lee DA (2009). Osteogenic differentiation of human mesenchymal stem cells within a perfused bioreactor system. European Cells and Materials  vol. 18, (SUPPL. 2)
Pattappa G, Jegard NC, de Bruijn JD and Lee DA (2009). The influence of oxygen tension on the colony formation and proliferation of human mesenchymal stem cells. European Cells and Materials  vol. 18, (SUPPL. 2)
Maeda E, Shelton JC, Bader DL and Lee DA (2009). Differential regulation of gene expression in isolated tendon fascicles exposed to cyclic tensile strain in vitro. Journal of Applied Physiology  vol. 106, (2) 506-512. 10.1152/japplphysiol.90981.2008
Eniwumide JO, Lee DA and Bader DL (2009). The development of a bioreactor to perfuse radially-confined hydrogel constructs: design and characterization of mass transport properties. Biorheology  vol. 46, (5) 417-437. 10.3233/BIR-2009-0552
Berry CC, Shelton JC and Lee DA (2009). Cell-generated forces influence the viability, metabolism and mechanical properties of fibroblast-seeded collagen gel constructs. J Tissue Eng Regen Med  vol. 3, (1) 43-53. 10.1002/term.133

2008

Pattappa G, A. Lee D and De Bruijn JD (2008). Metabolic characteristics of human mesenchymal stem cells expanded under normoxic conditions. 8th World Biomaterials Congress 2008  vol. 1,
Lee D and Schroeder J (2008). Phenotypic analysis of Arabidopsis mutants: heavy metal stress. Cold Spring Harbor Laboratory  Cold Spring Harbor Protocols  vol. 2008, (9) 10.1101/pdb.prot4971
Heywood HK and Lee DA (2008). Monolayer expansion induces an oxidative metabolism and ROS in chondrocytes. Biochem Biophys Res Commun  vol. 373, (2) 224-229. 10.1016/j.bbrc.2008.06.011
Maeda E, Shelton JC, Bader DL and Lee DA (2008). Collagen synthesis by tenocytes in fascicles subjected to intermittent cyclic strain. European Cells and Materials  vol. 16, (SUPPL. 3)
Heywood HK and Lee DA (2008). The effect of oxygen supply on chondrocyte metabolic phenotype during monolayer culture. European Cells and Materials  vol. 16, (SUPPL. 3)
Chowdhury TT, Salter DM, Bader DL and Lee DA (2008). Signal transduction pathways involving p38 MAPK, JNK, NF kappa B and AP-1 influences the response of chondrocytes cultured in agarose constructs to IL-1 beta and dynamic compression. Inflamm Res  vol. 57, (7) 306-313. 10.1007/s00011-007-7126-y
Hughes D, Whitaker Y, Lee D and Eckhause J (2008). Advantages, Disadvantages, and Uses of Generalized Activity Networks for Schedule Estimation. Military Operations Research Society  Military Operations Research  vol. 13, (3) 27-40. 10.5711/morj.13.3.27
Campbell JJ, Bader DL and Lee DA (2008). Mechanical loading modulates intracellular calcium signaling in human mesenchymal stem cells. J Appl Biomater Biom  vol. 6, (1) 9-15. 10.1177/228080000800600102
Chowdhury TT, Arghandawi S, Brand J, Akanji OO, Bader DL, Salter DM and Lee DA (2008). Dynamic compression counteracts IL-1beta induced inducible nitric oxide synthase and cyclo-oxygenase-2 expression in chondrocyte/agarose constructs. Arthritis Res Ther  vol. 10, (2) 10.1186/ar2389
Chowdhury TT, Akanji OO, Salter DM, Bader DL and Lee DA (2008). Dynamic compression influences interleukin-1 beta-induced nitric oxide and prostaglandin E-2 release by articular chondrocytes via alterations in iNOS and COX-2 expression. Biorheology  vol. 45, (3-4) 257-274. 10.3233/BIR-2008-0474
Lee DA (2008). Surgeons carry out first implant of pulmonary human heart valve. Biomedical Materials  (MAY)

2007

Chowdhury TT, Akanji OO, Arghandawi S, Salter DM, Bader DL and Lee DA (2007). 52 REAL-TIME PCR USING MOLECULAR BEACONS TO DETECT INOS AND COX-2 EXPRESSION IN CHONDROCYTE/AGAROSE CONSTRUCTS SUBJECTED TO IL-1β AND DYNAMIC COMPRESSION. Elsevier  Osteoarthritis and Cartilage  vol. 15, c42-c43. 10.1016/s1063-4584(07)61688-4
Lee D, Redfern O and Orengo C (2007). Predicting protein function from sequence and structure. Springer Nature  Nature Reviews Molecular Cell Biology  vol. 8, (12) 995-1005. 10.1038/nrm2281
Chen Y-H, Chang H-H, Chen Y-J, Lee D, Chiang H-H and Jane Yao C-C (2007). Root contact during insertion of miniscrews for orthodontic anchorage increases the failure rate: an animal study. Wiley  Clinical Oral Implants Research  07102500154-???. 10.1111/j.1600-0501.2007.01418.x
Maeda E, Shelton JC, Bader DL and Lee DA (2007). Time dependence of cyclic tensile strain on collagen production in tendon fascicles. Biochem Biophys Res Commun  vol. 362, (2) 399-404. 10.1016/j.bbrc.2007.08.029
Lee DA (2007). Products: CryoLife wins US patent for foam wound sealant. Biomedical Materials  (JULY)
Lee DA and Hall J (2007). Products: CryoLife wins rights to distribute replacement pericardium. Biomedical Materials  (MAR.)
Lee DA (2007). Industry news: CryoLife signs Irish distribution deal with Proxy Biomedical. Biomedical Materials  (NOV.) 6-7.

2006

Heywood HK, Bader DL and Lee DA (2006). Glucose Concentration and Medium Volume Influences Cell Viability and Glycosaminoglycan Synthesis in Chondrocyte-Seeded Alginate Constructs. Mary Ann Liebert  Tissue Engineering  10.1089/ten.2006.12.ft-281
Gao J, Yang Y, Lee D, Holdcroft S and Frisken BJ (2006). Self-Assembly of Latex Particles into Proton-Conductive Membranes. American Chemical Society (Acs)  Macromolecules  vol. 39, (23) 8060-8066. 10.1021/ma060467f
Screen HRC, Chhaya VH, Greenwald SE, Bader DL, Lee DA and Shelton JC (2006). The influence of swelling and matrix degradation on the microstructural integrity of tendon. Acta Biomater  vol. 2, (5) 505-513. 10.1016/j.actbio.2006.05.008
Akanji OO, Bader DL and Lee DA (2006). Direct current influences Ca 2+ signalling in chondrocytes. European Cells and Materials  vol. 11, (SUPPL.2)
Knight MM, Bomzon Z, Kimmel E, Sharma AM, Lee DA and Bader DL (2006). Chondrocyte deformation induces mitochondrial distortion and heterogeneous intracellular strain fields. Biomech Model Mechan  vol. 5, (2-3) 180-191. 10.1007/s10237-006-0020-7
Chowdhury TT, Appleby RN, Salter DM, Bader DA and Lee DA (2006). Integrin-mediated mechanotransduction in IL-1 beta stimulated chondrocytes. Biomech Model Mechanobiol  vol. 5, (2-3) 192-201. 10.1007/s10237-006-0032-3
BRANFORD O, LEE D, BADER D and GROBBELAAR A (2006). 1.3 The quantitative assessment of flexor tendon adhesion – a novel use of confocal microscopy to evaluate local strain, orientation and organisation. Sage Publications  Journal of Hand Surgery (European Volume)  vol. 31, 3-3. 10.1016/j.jhsb.2006.03.141
Lee D (2006). Ground plans [13]. Professional Engineering  vol. 19, (6)
Marsden RL, Lee D, Maibaum M, Yeats C and Orengo CA (2006). Comprehensive genome analysis of 203 genomes provides structural genomics with new insights into protein family space. Oxford University Press (Oup)  Nucleic Acids Research  vol. 34, (3) 1066-1080. 10.1093/nar/gkj494
Heywood HK, Bader DL and Lee DA (2006). Rate of oxygen consumption by isolated articular chondrocytes is sensitive to medium glucose concentration. Journal of Cellular Physiology  vol. 206, (2) 402-410. 10.1002/jcp.20491
Marsden RL, Ranea JAG, Sillero A, Redfern O, Yeats C, Maibaum M, Lee D, Addou S, Reeves GA, Dallman TJ and Orengo CA (2006). Exploiting protein structure data to explore the evolution of protein function and biological complexity. The Royal Society  Philosophical Transactions of The Royal Society B Biological Sciences  vol. 361, (1467) 425-440. 10.1098/rstb.2005.1801
Chowdhury TT, Bader DL and Lee DA (2006). Anti-inflammatory effects of IL-4 and dynamic compression in IL-1beta stimulated chondrocytes. Biochem Biophys Res Commun  vol. 339, (1) 241-247. 10.1016/j.bbrc.2005.11.016
Knight MM, Toyoda T, Lee DA and Bader DL (2006). Mechanical compression and hydrostatic pressure induce reversible changes in actin cytoskeletal organisation in chondrocytes in agarose. J Biomech  vol. 39, (8) 1547-1551. 10.1016/j.jbiomech.2005.04.006
Chowdhury TT, Bader DL and Lee DA (2006). Dynamic compression counteracts IL-1beta induced iNOS and COX-2 activity by human chondrocytes cultured in agarose constructs. Biorheology  vol. 43, (3,4) 413-429.
Bader DL, Lee DA and Knight MM (2006). Chondrocyte Deformation and Mechanotransduction in Cartilage Model Systems(International Workshop 2). Japan Society of Mechanical Engineers  The Proceedings of The Bioengineering Conference Annual Meeting of Bed/Jsme  vol. 2005.18, 2-3. 10.1299/jsmebio.2005.18.2
Chowdhury TT, Raveenthiran SP, Bader DL and Lee DA (2006). P140 DYNAMIC COMPRESSION COUNTERACTS FIBRONECTIN FRAGMENT INDUCED UPREGULATION OF NITRIC OXIDE. Elsevier  Osteoarthritis and Cartilage  vol. 14, 10.1016/s1063-4584(07)60592-5
Lee DA and Gridley A (2006). Industry news: CryoLife, BioForm sign glue deal. Biomedical Materials  (DEC.) 7-8.
Lee DA (2006). Products: Spinal implant looks good so far. Biomedical Materials  (JUNE) 4-5.
Lee DA (2006). Spinal implants: CryoLife's spinal disc repair study completes enrolment. Biomedical Materials  (SEP.) 9-10.
Lee DA (2006). Government: US law ensures funding for protein hydrogel development. Biomedical Materials  (DEC.)
Enobakhare B, Bader DL and Lee DA (2006). Concentration and M/G ratio influence the physiochemical and mechanical properties of alginate constructs for tissue engineering. J Appl Biomater Biomech  vol. 4, (2) 87-96. 10.1177/228080000600400203

2005

Yeats C, Maibaum M, Marsden R, Dibley M, Lee D, Addou S and Orengo CA (2005). Gene3D: modelling protein structure, function and evolution. Oxford University Press (Oup)  Nucleic Acids Research  vol. 34, (suppl_1) d281-d284. 10.1093/nar/gkj057
Screen HRC, Bader DL, Shelton JC and Lee DA (2005). Cyclic mechanical conditioning of isolated tendon fascicles results in an upregulation of collagen production. Proceedings of The 2005 Summer Bioengineering Conference  vol. 2005, 193-194.
Chowdhury TT, Bader DL and Lee DA (2005). Dynamic compression counteracts IL-1-induced iNOS and COX-2 activity by human chondrocytes cultured in agarose constructs. Proceedings of The 2005 Summer Bioengineering Conference  vol. 2005, 251-252.
Chowdhury TT, Appleby RN, Salter DA, Bader DL and Lee DA (2005). Integrin mediated mechanotransduction in IL-1 stimulated bovine chondrocytes cultured in agarose constructs. Proceedings of The 2005 Summer Bioengineering Conference  vol. 2005, 545-546.
Wang MJ, Heywood HK, Bader DL, Paine MD, Stark JPW and Lee DA (2005). Identification and characterization of deposited fibronectin on biocompatible materials: Comparison of electrospray and wetting methods. Proceedings of The 2005 Summer Bioengineering Conference  vol. 2005, 439-440.
Bader DL and Lee DA (2005). Mechanical conditioning of cell-seeded constructs for soft tissue repair - Are optimisation strategies possible? 10.1007/1-4020-3741-4_7
Pingguan-Murphy B, Lee DA, Bader DL and Knight MM (2005). Activation of chondrocytes calcium signalling by dynamic compression is independent of number of cycles. Arch Biochem Biophys  vol. 444, (1) 45-51. 10.1016/j.abb.2005.09.015
Screen HRC, Shelton JC, Bader DL and Lee DA (2005). Cyclic tensile strain upregulates collagen synthesis in isolated tendon fascicles. Biochem Biophys Res Commun  vol. 336, (2) 424-429. 10.1016/j.bbrc.2005.08.102
Sengers BG, Heywood HK, Lee DA, Oomens CWJ and Bader DL (2005). Nutrient utilization by bovine articular chondrocytes: a combined experimental and theoretical approach. J Biomech Eng  vol. 127, (5) 758-766. 10.1115/1.1993664
Screen HRC, Shelton JC, Chhaya VH, Kayser MV, Bader DL and Lee DA (2005). The influence of noncollagenous matrix components on the micromechanical environment of tendon fascicles. Ann Biomed Eng  vol. 33, (8) 1090-1099. 10.1007/s10439-005-5777-9
Chowdhury TT, Bader DL and Lee DA (2005). Dynamic compression counteracts IL-1β induced INOS and COX-2 activity by human chondrocytes cultured in agarose constructs. European Cells and Materials  vol. 10, (SUPPL.2)
Catuogno C, Chowdhury TT, Bader DL and Lee DA (2005). Dynamic compression influences the biochemical response of human mesenchymal stem cells cultured in agarose constructs. European Cells and Materials  vol. 10, (SUPPL.2)
Eniwumide JO, Lee DA and Bader DL (2005). Perfusion-Enhancement of molecular transport within 3D scaffolds. European Cells and Materials  vol. 10, (SUPPL.2)
Heywood HK, Bader DL and Lee DA (2005). Superficial and deep chondrocyte subpopulations both express the crabtree effect but exhibit differences in oxygen consumption rate. European Cells and Materials  vol. 10, (SUPPL.2)
Campbell JJ, Lee DA and Bader DL (2005). Mechanical conditioning Influences Mesenchymal stem cell chondrogenesis. European Cells and Materials  vol. 10, (SUPPL.2)
Gao J, Lee D, Yang Y, Holdcroft S and Frisken BJ (2005). Self-Assembly of Surface-Charged Latex Nanoparticles: A New Route to the Creation of Continuous Channels for Ion Conduction. American Chemical Society (Acs)  Macromolecules  vol. 38, (14) 5854-5856. 10.1021/ma050777i
(2005). British Society for Matrix Biology Autumn Meeting Joint with the UK Tissue & Cell Engineering Society, University of Bristol, UK. Wiley  International Journal of Experimental Pathology  vol. 86, (3) a1-a56. 10.1111/j.0959-9673.2005.00426.x
Lee D, Grant A, Marsden RL and Orengo C (2005). Identification and distribution of protein families in 120 completed genomes using Gene3D. Wiley  Proteins Structure Function and Bioinformatics  vol. 59, (3) 603-615. 10.1002/prot.20409
Wang Y-N, Bouten CVC, Lee DA and Bader DL (2005). Compression-induced damage in a muscle cell model in vitro. Proc Inst Mech Eng H  vol. 219, (1) 1-12. 10.1243/095441105X9246
Goldberg AJ, Lee DA, Bader DL and Bentley G (2005). Autologous chondrocyte implantation. Culture in a TGF-beta-containing medium enhances the re-expression of a chondrocytic phenotype in passaged human chondrocytes in pellet culture. J Bone Joint Surg Br  vol. 87, (1) 128-134. 10.1302/0301-620X.87B1.14154

2004

Pearl F, Todd A, Sillitoe I, Dibley M, Redfern O, Lewis T, Bennett C, Marsden R, Grant A, Lee D, Akpor A, Maibaum M, Harrison A, Dallman T, Reeves G, Diboun I, Addou S, Lise S, Johnston C, Sillero A, Thornton J and Orengo C (2004). The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis. Oxford University Press (Oup)  Nucleic Acids Research  vol. 33, (suppl_1) d247-d251. 10.1093/nar/gki024
Lee DA, Randall F, Beattie G and Bentall RP (2004). Delusional discourse: An investigation comparing the spontaneous causal attributions of paranoid and non‐paranoid individuals. Wiley  Psychology and Psychotherapy Theory Research and Practice  vol. 77, (4) 525-540. 10.1348/1476083042555361
Bader DL, Shelton JC, Lee DA and SCREEN HRC (2004). Local Strain Measurement within Tendon. Strain  vol. 40, (4) 157-163. 10.1111/j.1475-1305.2004.00164.x
Bryant SJ, Anseth KS, Lee DA and Bader DL (2004). Crosslinking density influences the morphology of chondrocytes photoencapsulated in PEG hydrogels during the application of compressive strain. J Orthop Res  vol. 22, (5) 1143-1149. 10.1016/j.orthres.2004.02.001
Chowdhury TT, Salter DM, Bader DL and Lee DA (2004). Integrin-mediated mechanotransduction processes in TGFbeta-stimulated monolayer-expanded chondrocytes. Biochem Biophys Res Commun  vol. 318, (4) 873-881. 10.1016/j.bbrc.2004.04.107
Lee D (2004). Debt crisis looms [10]. Professional Engineering  vol. 17, (8)
Kim B-C, van Gelder H, Kim TA, Lee H-J, Baik KG, Chun HH, Lee DA, Choi KS and Kim S-J (2004). Activin Receptor-like Kinase-7 Induces Apoptosis through Activation of MAPKs in a Smad3-dependent Mechanism in Hepatoma Cells*. Elsevier  Journal of Biological Chemistry  vol. 279, (27) 28458-28465. 10.1074/jbc.m313277200
Bryant SJ, Chowdhury TT, Lee DA, Bader DL and Anseth KS (2004). Crosslinking density influences chondrocyte metabolism in dynamically loaded photocrosslinked poly(ethylene glycol) hydrogels. Ann Biomed Eng  vol. 32, (3) 407-417. 10.1023/b:abme.0000017535.00602.ca
LEE DA, van Osch G, Verhaar JAN, Mandl EW, van der Linden JC, van der Breevaart Bravenboer J and Weinans H (2004). Extracellular matrix influences the response of chondrocytes to dynamic compression. Trans. Orthop.Rev. Soc  vol. 29, 839-839.
Lee DA and Knight MM (2004). Mechanical loading of chondrocytes embedded in 3D constructs: in vitro methods for assessment of morphological and metabolic response to compressive strain. Methods Mol Med  vol. 100, 307-324. 10.1385/1-59259-810-2:307
Screen HRC, Lee DA, Bader DL and Shelton JC (2004). An investigation into the effects of the hierarchical structure of tendon fascicles on micromechanical properties. Proc Inst Mech Eng H  vol. 218, (2) 109-119. 10.1243/095441104322984004
Bader DL, KNIGHT MM, Bentley G, Kayser M and Holloway I (2004). Increased presence of cells with multiple elongated processes in osteoarthritic femoral head cartilage. Osteoarthritis Cartilage  vol. 12, (1) 17-24. 10.1016/j.joca.2003.09.001
Lee DA and Martin I (2004). Bioreactor Culture Techniques for Cartilage-Tissue Engineering. Biopolymer Methods in Tissue Engineering  Springer Nature  10.1385/1-59259-428-x:159
Wiseman M, Bader DL, Reisler T and Lee DA (2004). Passage in monolayer influences the response of chondrocytes to dynamic compression. Biorheology  vol. 41, (3-4) 283-298.
Holloway I, Kayser M, Lee DA, Bader DL, Bentley G and Knight MM (2004). Increased presence of cells with multiple elongated processes in osteoarthritic femoral head cartilage. Osteoarthritis Cartilage  vol. 12, (1) 17-24. 10.1016/j.joca.2003.09.001
Lee DA and Knight MM (2004). Mechanical Loading of Chondrocytes Embedded in 3D Constructs. Cartilage and Osteoarthritis  Springer Nature  10.1385/1-59259-810-2:307
Heywood HK, Sembi PK, Lee DA and Bader DL (2004). Cellular utilization determines viability and matrix distribution profiles in chondrocyte-seeded alginate constructs. Tissue Eng  vol. 10, (9-10) 1467-1479. 10.1089/ten.2004.10.1467
Grant A, Lee D and Orengo C (2004). Progress towards mapping the universe of protein folds. Springer Nature  Genome Biology  vol. 5, (5) 10.1186/gb-2004-5-5-107
Lee DA, Fefeu S, Edo‐Ukeh AA, Orengo CA and Slingsby C (2004). EyeSite: a semi‐automated database of protein families in the eye. Oxford University Press (Oup)  Nucleic Acids Research  vol. 32, (suppl_1) d148-d152. 10.1093/nar/gkh090

2003

Chowdhury TT, Bader DL, Shelton JC and Lee DA (2003). Temporal regulation of chondrocyte metabolism in agarose constructs subjected to dynamic compression. Arch Biochem Biophys  vol. 417, (1) 105-111. 10.1016/s0003-9861(03)00340-0
Chowdhury TT, Bader DL and Lee DA (2003). Dynamic compression counteracts IL-1 beta-induced release of nitric oxide and PGE2 by superficial zone chondrocytes cultured in agarose constructs. Osteoarthritis Cartilage  vol. 11, (9) 688-696. 10.1016/s1063-4584(03)00149-3
Berry CC, Shelton JC, Bader DL and Lee DA (2003). Influence of external uniaxial cyclic strain on oriented fibroblast-seeded collagen gels. Tissue Eng  vol. 9, (4) 613-624. 10.1089/107632703768247313
Wiseman M, Henson F, Lee DA and Bader DL (2003). Dynamic compressive strain inhibits nitric oxide synthesis by equine chondrocytes isolated from different areas of the cartilage surface. Equine Vet J  vol. 35, (5) 451-456. 10.2746/042516403775600532
Lee D, Grant A, Buchan D and Orengo C (2003). A structural perspective on genome evolution. Elsevier  Current Opinion in Structural Biology  vol. 13, (3) 359-369. 10.1016/s0959-440x(03)00079-4
Knight MM, Roberts SR, Lee DA and Bader DL (2003). Live cell imaging using confocal microscopy induces intracellular calcium transients and cell death. Am J Physiol Cell Physiol  vol. 284, (4) C1083-C1089. 10.1152/ajpcell.00276.2002
Lee DA, Reisler T and Bader DL (2003). Expansion of chondrocytes for tissue engineering in alginate beads enhances chondrocytic phenotype compared to conventional monolayer techniques. Acta Orthop Scand  vol. 74, (1) 6-15. 10.1080/00016470310013581
Shelton JC, Bader DL and Lee DA (2003). Mechanical conditioning influences the metabolic response of cell-seeded constructs. Cells Tissues Organs  vol. 175, (3) 140-150. 10.1159/000074630
Hernandez D, Addou S, Lee D, Orengo C, Shephard EA and Phillips IR (2003). Trimethylaminuria and a human FMO3 mutation database. Hum Mutat  vol. 22, (3) 209-213. 10.1002/humu.10252
Berry CC, Cacou C, Lee DA, Bader DL and Shelton JC (2003). Dermal fibroblasts respond to mechanical conditioning in a strain profile dependent manner. Biorheology  vol. 40, (1-3) 337-345.
Screen HRC, Lee DA, Bader DL and Shelton JC (2003). Development of a technique to determine strains in tendons using the cell nuclei. Biorheology  vol. 40, (1-3) 361-368.
Chowdhury TT, LEE DA, Salter DM, Shelton JC and Bader DL (2003). alpha5beta1 integrin mediates mechanotransduction processes in TGFbeta-stimulated human chondrocyte / agarose constructs and subjected to dynamic compression. Osteoarthritis Cartilage  vol. 11, (Suppl 1) S2-S3.
Chowdhury TT, Shelton JC, Bader DL and LEE DA (2003). Control of mechanotrasduction processes in dynamically stimulated human and bovine chondrocytes cultured in agarose constructs. Internat. J. Artificial Organs  vol. 26, (9) 858-858.
LEE DA, Heywood HK, Baaijens FPT, Oomens CWJ and Sengers BG (2003). Experimental and theoretical analysis of glucose dependent oxygen utilization by bovine articular chondrocytes. Internat. J. Artificial Organs  vol. 26, 875-875.

2002

Berry CC, Shelton JC, Bader DL and Lee DA (2002). The influence of uniaxial cyclic strain on orientated fibroblast seeded collagen gels. Third Smith and Nephew International Symposium - Translating Tissue Engineering Into Products 
Lee DA (2002). The design of bioreactor systems for cartilage tissue engineering. Third Smith and Nephew International Symposium - Translating Tissue Engineering Into Products 
Turner JEH, Allington‐Smith J, Chapman S, Content R, Done C, Haynes R, Lee D and Morris S (2002). The origin of [Fe ii] emission in NGC 4151. Oxford University Press (Oup)  Monthly Notices of The Royal Astronomical Society  vol. 331, (2) 284-292. 10.1046/j.1365-8711.2002.05214.x
Knight MM, van de Breevaart Bravenboer J, Lee DA, van Osch GJVM, Weinans H and Bader DL (2002). Cell and nucleus deformation in compressed chondrocyte-alginate constructs: temporal changes and calculation of cell modulus. Biochim Biophys Acta  vol. 1570, (1) 1-8. 10.1016/s0304-4165(02)00144-7
Pearl FMG, Lee D, Bray JE, Buchan DWA, Shepherd AJ and Orengo CA (2002). The CATH extended protein‐family database: Providing structural annotations for genome sequences. Wiley  Protein Science  vol. 11, (2) 233-244. 10.1110/ps.16802
BADER DL, Shelton JC, Lee DA and Screen HRC (2002). Development of a technique to determine strains in tendons using the cell nuclei. Biorheology  vol. 40, 361-368.
Bader DL, Shelton JC, Lee DA and SCREEN HRC (2002). Non-collagenous matrix components influence the micromechanical environment of tenocytes within tendon fascicles subjected to tensile strain. Eur. Cells Mat.  vol. 4:S1, 41-42.

2001

Lee D, Haynes R, Ren D and Allington‐Smith J (2001). Characterization of Lenslet Arrays for Astronomical Spectroscopy. Iop Publishing  Publications of The Astronomical Society of The Pacific  vol. 113, (789) 1406-1419. 10.1086/323908
Bader D and Lee D (2001). Gene Therapy and Tissue Engineering in Orthopaedic and Sports Medicine (2000) Edited by Johnny Huard and Freddie H. Fu, ISBN 0-8176-4071-1, Birkhauser: Boston pages 1–286. Elsevier  Medical Engineering & Physics  vol. 23, (8) 10.1016/s1350-4533(01)00086-8
Lee D, Haynes R and Skeen DJ (2001). Properties of optical fibres at cryogenic temperatures. Oxford University Press (Oup)  Monthly Notices of The Royal Astronomical Society  vol. 326, (2) 774-780. 10.1046/j.1365-8711.2001.04630.x
Ziegler BL, Bower RG, Smail I, Davies RL and Lee D (2001). The early‐type galaxy population in Abell 2218. Oxford University Press (Oup)  Monthly Notices of The Royal Astronomical Society  vol. 325, (4) 1571-1590. 10.1046/j.1365-8711.2001.04563.x
Chowdhury TT, Bader DL and Lee DA (2001). Dynamic compression inhibits the synthesis of nitric oxide and PGE(2) by IL-1beta-stimulated chondrocytes cultured in agarose constructs. Biochem Biophys Res Commun  vol. 285, (5) 1168-1174. 10.1006/bbrc.2001.5311
Antonyak MA, Singh US, Lee DA, Boehm JE, Combs C, Zgola MM, Page RL and Cerione RA (2001). Effects of Tissue Transglutaminase on Retinoic Acid-induced Cellular Differentiation and Protection against Apoptosis*. Elsevier  Journal of Biological Chemistry  vol. 276, (36) 33582-33587. 10.1074/jbc.m105318200
Knight MM, Ross JM, Sherwin AF, Lee DA, Bader DL and Poole CA (2001). Chondrocyte deformation within mechanically and enzymatically extracted chondrons compressed in agarose. Biochim Biophys Acta  vol. 1526, (2) 141-146. 10.1016/s0304-4165(01)00118-0
Knight MM, Idowu BD, Lee DA and Bader DL (2001). Temporal changes in cytoskeletal organisation within isolated chondrocytes quantified using a novel image analysis technique. Med Biol Eng Comput  vol. 39, (3) 397-404. 10.1007/BF02345297
Roberts SR, Knight MM, Lee DA and Bader DL (2001). Mechanical compression influences intracellular Ca2+ signaling in chondrocytes seeded in agarose constructs. J Appl Physiol (1985)  vol. 90, (4) 1385-1391. 10.1152/jappl.2001.90.4.1385
Bouten CV, Knight MM, Lee DA and Bade DL (2001). Compressive deformation and damage of muscle cell subpopulations in a model system. Ann Biomed Eng  vol. 29, (2) 153-163. 10.1114/1.1349698
Bader DL, KNIGHT MM, Lee DA and Bouten CV (2001). Compressive deformation and damage of muscle cell subpopulaltions in a model system. Ann. Biomed. Eng.  vol. 29, (2) 153-163. 10.1114/1.1349698
Lee DA (2001). Embryonic stem cells: scientific possibilities, ethical considerations, and regulation in the UK. Interdiscipl Sci Rev  vol. 26, (2) 112-124. 10.1179/isr.2001.26.2.112
Albà MM, Lee D, Pearl FMG, Shepherd AJ, Martin N, Orengo CA and Kellam P (2001). VIDA: a virus database system for the organization of animal virus genome open reading frames. Oxford University Press (Oup)  Nucleic Acids Research  vol. 29, (1) 133-136. 10.1093/nar/29.1.133
Pearl FM, Martin N, Bray JE, Buchan DW, Harrison AP, Lee D, Reeves GA, Shepherd AJ, Sillitoe I, Todd AE, Thornton JM and Orengo CA (2001). A rapid classification protocol for the CATH Domain Database to support structural genomics. Oxford University Press (Oup)  Nucleic Acids Research  vol. 29, (1) 223-227. 10.1093/nar/29.1.223

2000

Berry CC, Cacou C, Shelton JC, Bader DL and Lee DA (2000). Biological response of cyclic strain on developed cell seeded collagen gel model. Second Smith and Nephew International Symposium - Tissue Engineering 2000: Advances in Tissue Engineering, Biomaterials and Cell 
Enobakhare BO, Bader DL and Lee DA (2000). Physiochemical, biochemical and mechanical characterisation of chondrocyte-alginate constructs. Second Smith and Nephew International Symposium - Tissue Engineering 2000: Advances in Tissue Engineering, Biomaterials and Cell 
Chowdhury TT, Bader DL and Lee DA (2000). Dynamic compression inhibits the synthesis of nitric oxide by IL-1β stimulated chondrocytes cultured in agarose constructs. Second Smith and Nephew International Symposium - Tissue Engineering 2000: Advances in Tissue Engineering, Biomaterials and Cell 
Cacou C, Palmer D, Lee DA, Bader DL and Shelton JC (2000). A system for monitoring the response of uniaxial strain on cell seeded collagen gels. Med Eng Phys  vol. 22, (5) 327-333. 10.1016/s1350-4533(00)00040-0
Idowu BD, Knight MM, Bader DL and Lee DA (2000). Confocal analysis of cytoskeletal organisation within isolated chondrocyte sub-populations cultured in agarose. Histochem J  vol. 32, (3) 165-174. 10.1023/a:1004095207330
Lee D and Allington‐Smith JR (2000). An experimental investigation of immersed gratings. Oxford University Press (Oup)  Monthly Notices of The Royal Astronomical Society  vol. 312, (1) 57-69. 10.1046/j.1365-8711.2000.03151.x
Lee DA, Knight MM, Bolton JF, Idowu BD, Kayser MV and Bader DL (2000). Chondrocyte deformation within compressed agarose constructs at the cellular and sub-cellular levels. J Biomech  vol. 33, (1) 81-95. 10.1016/s0021-9290(99)00160-8
Lee DA, Noguchi T, Frean SP, Lees P and Bader DL (2000). The influence of mechanical loading on isolated chondrocytes seeded in agarose constructs. Biorheology  vol. 37, (1-2) 149-161.
Pearl FM, Lee D, Bray JE, Sillitoe I, Todd AE, Harrison AP, Thornton JM and Orengo CA (2000). Assigning genomic sequences to CATH. Oxford University Press (Oup)  Nucleic Acids Research  vol. 28, (1) 277-282. 10.1093/nar/28.1.277
Bader D and Lee D (2000). Chapter 4 Structure – Properties of Soft Tissues Articular Cartilage. Structural Biological Materials - Design and Structure-Property Relationships  Elsevier  10.1016/s1470-1804(00)80008-5

1999

Kang SH, Bang Y-J, Im Y-H, Yang H-K, Lee DA, Lee HY, Lee HS, Kim NK and Kim S-J (1999). Transcriptional repression of the transforming growth factor-β type I receptor gene by DNA methylation results in the development of TGF-β resistance in human gastric cancer. Springer Nature  Oncogene  vol. 18, (51) 7280-7286. 10.1038/sj.onc.1203146
Lee DA (1999). Models of government regulation of privatized transit systems in five Latin American cities. Transportation Quarterly  vol. 53, (1) 21-39.
Haynes R, Lee D, Allington‐Smith J, Content R, Dodsworth G, Lewis I, Sharples R, Turner J, Webster J, Done C, Peletier R, Parry I and Chapman S (1999). Multiple‐Object and Integral Field Near‐Infrared Spectroscopy Using Fibers. Iop Publishing  Publications of The Astronomical Society of The Pacific  vol. 111, (765) 1451-1468. 10.1086/316459
White AET, Bentley G, Stephens MD, Bader DL, Giddins GEB and Lee DA (1999). The effects of storage temperature on the composition, metabolism acid biomechanical properties of human articular cartilage. Knee  vol. 6, (3) 197-205. 10.1016/S0968-0160(99)00007-1
Lee DA (1999). Introducing Fare Simplification and New Convenience Fares at Connecticut Transit. Sage Publications  Transportation Research Record Journal of The Transportation Research Board  vol. 1669, (1) 109-112. 10.3141/1669-13

1998

Lee D (1998). A Tour through through. Sage Publications  Journal of English Linguistics  vol. 26, (4) 333-351. 10.1177/007542429802600404
Lee DA, Noguchi T, Knight MM, O'Donnell L, Bentley G and Bader DL (1998). Response of chondrocyte subpopulations cultured within unloaded and loaded agarose. J Orthop Res  vol. 16, (6) 726-733. 10.1002/jor.1100160615
Knight MM, Lee DA and Bader DL (1998). The influence of elaborated pericellular matrix on the deformation of isolated articular chondrocytes cultured in agarose. Biochim Biophys Acta  vol. 1405, (1-3) 67-77. 10.1016/s0167-4889(98)00102-5
Lee DA, Frean SP, Lees P and Bader DL (1998). Dynamic mechanical compression influences nitric oxide production by articular chondrocytes seeded in agarose. Biochem Bioph Res Co  vol. 251, (2) 580-585. 10.1006/bbrc.1998.9520
Lee DA and Goodfellow JM (1998). The pH-Induced Release of Iron from Transferrin Investigated with a Continuum Electrostatic Model. Elsevier  Biophysical Journal  vol. 74, (6) 2747-2759. 10.1016/s0006-3495(98)77983-4
Knight MM, Ghori SA, Lee DA and Bader DL (1998). Measurement of the deformation of isolated chondrocytes in agarose subjected to cyclic compression. Med Eng Phys  vol. 20, (9) 684-688. 10.1016/s1350-4533(98)00080-0
Lee DA, Assoku E and Doyle V (1998). A specific quantitative assay for collagen synthesis by cells seeded in collagen-based biomaterials using sirius red F3B precipitation. J Mater Sci-Mater M  vol. 9, (1) 47-51. 10.1023/a:1008882628142
Lao WC, Lee D, Burroughs AK, Lanzani G, Rolles K, Emery VC and Griffiths PD (1998). Erratum: Use of polymerase chain reaction to provide prognostic information on human cytomegalovirus disease after liver transplantation. (Journal of Medical Virology 51 (152-158)). Journal of Medical Virology  vol. 54, (1)

1997

Lee DA, Salih V, Stockton EF, Stanton JS and Bentley G (1997). Effect of Normal Synovial Fluid on the Metabolism of Articular Chondrocytes In Vitro. Wolters Kluwer  Clinical Orthopaedics and Related Research®  vol. 342, (&NA;) 228-238. 10.1097/00003086-199709000-00030
Lee D and Recce M (1997). Quantitative Evaluation of the Exploration Strategies of a Mobile Robot. Sage Publications  The International Journal of Robotics Research  vol. 16, (4) 413-447. 10.1177/027836499701600401
Lee DA and Bader DL (1997). Compressive strains at physiological frequencies influence the metabolism of chondrocytes seeded in agarose. J Orthop Res  vol. 15, (2) 181-188. 10.1002/jor.1100150205
O'Neil C, Lee D, Clewley G, Johnson MA and Emery VC (1997). Prevalence of anti‐Vif antibodies in HIV‐1 infected individuals assessed using recombinant baculovirus expressed Vif protein. Wiley  Journal of Medical Virology  vol. 51, (3) 139-144. 10.1002/(sici)1096-9071(199703)51:3<139::aid-jmv1>3.0.co;2-7
Lee DA (1997). Frame conflicts and competing construals in family argument. Elsevier  Journal of Pragmatics  vol. 27, (3) 339-360. 10.1016/s0378-2166(96)00041-0
Lao WC, Lee D, Burroughs AK, Lanzini G, Rolles K, Emery VC and Griffiths PD (1997). Use of polymerase chain reaction to provide prognostic information on human cytomegalovirus disease after liver transplantation. Wiley  Journal of Medical Virology  vol. 51, (3) 152-158. 10.1002/(sici)1096-9071(199703)51:3<152::aid-jmv3>3.0.co;2-5

1996

(1996). Preliminary Results From the Cancer Research Campaign Trial Evaluating Tamoxifen Duration in Women Aged Fifty Years or Older With Breast Cancer. Oxford University Press (Oup)  Journal of The National Cancer Institute  vol. 88, (24) 1834-1839. 10.1093/jnci/88.24.1834
Enobakhare BO, Bader DL and Lee DA (1996). Quantification of sulfated glycosaminoglycans in chondrocyte/alginate cultures, by use of 1,9-dimethylmethylene blue. Anal Biochem  vol. 243, (1) 189-191. 10.1006/abio.1996.0502
Gor D, Lee D and Emery VC (1996). J. Virol. Methods Erratum to “Detection of human cytomegalovirus polymerase chain reaction products using oligonucleotide probes directly conjugated to alkaline phosphatase” [61 (1996) 145]. Elsevier  Journal of Virological Methods  vol. 62, (2) 10.1016/s0166-0934(96)02147-7
Gor D, Lee D and Emery VC (1996). Detection of human cytomegalovirus polymerase chain reaction products using oligonucleotide probes directly conjugated to alkaline phosphatase. Elsevier  Journal of Virological Methods  vol. 61, (1-2) 145-150. 10.1016/0166-0934(96)02081-2
Doyle V, Pearson R, Lee D, Wolowacz S and Mc Taggart S (1996). An investigation of the growth of human dermal fibroblasts on poly-L-lactic acid in vitro. Springer Nature  Journal of Materials Science: Materials in Medicine  vol. 7, (6) 381-385. 10.1007/bf00154554
Gorinsky B, Laskowski RA, Lee DA and Bomford A (1996). Conformational analysis of pentapeptide sequences matching a proposed recognition motif for lysosomal degradation. Elsevier  Biochimica Et Biophysica Acta  vol. 1293, (2) 243-253. 10.1016/0167-4838(95)00256-1
Lee D and Sanders M (1996). Implementing a Visioning and Strategic Planning Process at CTTransit. Sage Publications  Transportation Research Record Journal of The Transportation Research Board  vol. 1521, 58-61. 10.3141/1521-08

1995

Lee DA and Bader DL (1995). The development and characterization of an in vitro system to study strain-induced cell deformation in isolated chondrocytes. In Vitro Cell Dev-An  vol. 31, (11) 828-835. 10.1007/BF02634565

1994

Lee DA, Bentley G and Archer CW (1994). Proteoglycan depletion alone is not sufficient to stimulate proteoglycan synthesis in cultured bovine cartilage explants. Elsevier  Osteoarthritis and Cartilage  vol. 2, (3) 175-185. 10.1016/s1063-4584(05)80067-6
Reissis N, Downes S, Kayser M, Lee D and Bentley G (1994). Characterization of the repair tissue in articular cartilage defects using silver-enhanced colloidal gold immunostaining. Springer Nature  Journal of Materials Science: Materials in Medicine  vol. 5, (6-7) 402-406. 10.1007/bf00058973

1993

Lee DA, Bentley G and Archer CW (1993). The control of cell division in articular chondrocytes. Elsevier  Osteoarthritis and Cartilage  vol. 1, (2) 137-145. 10.1016/s1063-4584(05)80029-9

1991

Lee DA (1991). Categories in the description of just. Elsevier  Lingua  vol. 83, (1) 43-66. 10.1016/0024-3841(91)90051-6

1990

Archer CW, Cottrill CP and Lee D (1990). Effects of ascorbate on myogenesis in micromass culture. Springer Nature  In Vitro Cellular & Developmental Biology  vol. 26, (3) 259-264. 10.1007/bf02624455
Lee DA (1990). Digitization of the AT&T worldwide intelligent network. At&Amp;T Technology  vol. 5, (1) 14-19.

1989

Jones BM, Evans PM and Lee DA (1989). Relation between the rate of cell movement under agarose and the positioning of cells in heterotypic aggregates. Elsevier  Experimental Cell Research  vol. 180, (1) 287-296. 10.1016/0014-4827(89)90233-4

1988

Lee D (1988). INTEGRATED SERVICES DIGITAL NETWORK. British Telecommunications Engineering  vol. 7, (pt 2) 2-12.
Lee DA (1988). Moth Density and Oviposition Patterns of the European Corn Borer, Ostrinia nubilalis (Lepidoptera: Pyralidae), in Alberta. Oxford University Press (Oup)  Environmental Entomology  vol. 17, (2) 220-224. 10.1093/ee/17.2.220

1987

Lee DA and Spence JR (1987). Reproductive patterns of the European corn borer (Ostrinia nubilalis) in Alberta. Canadian Science Publishing  Canadian Journal of Zoology  vol. 65, (7) 1733-1740. 10.1139/z87-268
Lee D (1987). The semantics of just. Elsevier  Journal of Pragmatics  vol. 11, (3) 377-398. 10.1016/0378-2166(87)90138-x

1983

Lee DA, Winslow NR, Speight AN and Hey EN (1983). Prevalence and spectrum of asthma in childhood. Bmj  The Bmj  vol. 286, (6373) 10.1136/bmj.286.6373.1256
Speight AN, Lee DA and Hey EN (1983). Underdiagnosis and undertreatment of asthma in childhood. Bmj  The Bmj  vol. 286, (6373) 10.1136/bmj.286.6373.1253

Grants

Grants of specific relevance to Predictive in vitro Models
BBSRC IAA Queen Mary University of London
Lee DA and Draviam VM
£300,000 Biotechnology and Biological Sciences Research Council (31-03-2022 - 30-03-2025)
Summary
Engineering Circadian Biology into Induced Pluripotent Stem Cell Organ-on-a-Chip Models
Lee DA, Heywood HK, Lin Y-Y and O'Neill JS
£201,874 National Centre for the Replacement Refinement and Reduction of Animals in Research (01-02-2023 - 30-08-2024)
Summary


Queen Mary University of London - Flexible Talent Mobility Account 4
Lee DA
£80,000 Biotechnology and Biological Sciences Research Council (01-01-2023 - 30-03-2023)
Summary
Mechano-circadian rhythmicity - a key component in joint health and disease
Lee DA and Peggrem S
Engineering and Physical Sciences Research Council (24-09-2017 - 30-07-2021)
Summary
Super-Resolution Microscopy of live cells in 3D
Ruban A, Pickersgill RW, Rakyan V, Mullineaux CW, Lee DA, Sharp TV, Alves Godinho SI, Stieglitz B, Hanke GT, Darbari VC, Engl CM, Palacios de Castro MI and Thorpe PH
£369,201 Biotechnology and Biological Sciences Research Council (01-05-2020 - 30-04-2021)
Summary
Mechno-regulation of genome function to direct stem cell fate
Lee DA and Gavara N
£436,193 Biotechnology and Biological Sciences Research Council (01-01-2017 - 31-12-2019)
Summary
Augmenting sirtuin activity to drive cartilage regeneration and treat osteoarthritis
Lee D
£150,201 Dunhill Medical Trust (01-11-2014 - 31-12-2016)
Summary
DTA - Queen Mary, University of London
Clarke J, Administrator P, Chadha R, Lee DA, Moran M, Parini C and White SA
£860,487 Engineering and Physical Sciences Research Council (30-09-2008 - 29-09-2012)
Summary
Mechanoregulation of nuclear architecture and genome function: A novel mechanism in stem cell fate
Lee DA, Mauck RL, Discher DE and Cremer T
International Human Frontier Science Program Organization (01-05-2009 - 30-04-2012)
Summary
Platform Grant: Multiscale Mechanobiology for Tissue Engineering
Lee DA, Knight MM and Heywood H
£995,000 Engineering and Physical Sciences Research Council (30-04-2007 - 29-04-2012)
Queen Mary, University of London - Discipline Bridging Initiative
Lee DA
£355,732 Medical Research Council (01-11-2006 - 30-10-2010)
Summary
The modulation of metabolic phenotype in chondrocytes during monolayer expansion in relation to synthetic phenotypic stability, oxidative stress and proliferative senescence.
Lee DA and Heywood H
£318,498 Wellcome Trust (01-02-2007 - 31-08-2010)
Interleukin-1B and dynamic compressive strain influence the release of nitric oxide and prostaglandin E2 from articular chondrocyte sub-populations via distinct but interacting intracellular signalling pathways.
Salter DM, Bader DL and Lee DA
£59,557 Wellcome Trust (01-10-2004 - 31-10-2008)
Summary
Interleukin-1B and dynamic compressive strain influence the release of nitric oxide and prostaglandin E2 from articular chondrocyte sub-populations via distinct but interacting intracellular signalling pathways.
Lee DA, Bader DL and Salter DM
£175,211 Wellcome Trust (01-07-2004 - 31-01-2008)
Summary