Intestine

Context of Use or Disease: Inflammatory bowel disease (IBD), Crohn’s disease (CD), ulcerative colitis (UC), fungal infection, tissue fibrosis

DOI: bioRxiv 2025

Platform: 3D printed microfluidic chip on microscope slides 

Description: Fibrin hydrogel-based 3D organotypic human intestine model with closed loop vascular flow system. Incorporates Caco-2 gut epithelial cells, CCD-18Co fibroblasts, HUVEC vascular endothelial cells, and primary blood monocytes (or THP-1 cell line). A silicon frame is extrusion printed onto a microscope slide and used to hold a fibrin hydrogel that contains fibroblasts +/- monocytes. This forms the extracellular matrix, and a readily accessible vascular channel is created during this process. Intestinal epithelial cells are seeded onto the surface of the fibrin ECM, and HUVECs via the vascular channel. 

Different platforms for pre-clinical translational models as available at the CPM

Fig. 1. Schematic showing intestine model design.

Characterisation & Validation: The intestinal models are cultured in a custom complete media for up to 7 days. Cellular morphology and cell specific markers (E-Cadherin, ZO-1, Vimentin) have been validated through H&E and immunofluorescent staining. Intact barrier function was shown using FITC-dextran paracellular permeability assays. Intestinal microbiota has been inoculated onto the epithelial surface (C. albicans). Supernatant multiplex ELISA demonstrates relevant cell-cell interaction between monocytes and fibroblasts through IL-8, IL-6 and CCL2 cytokines.

Ongoing Research: Investigation of how human intestinal fungi trigger inflammation and gut tissue remodelling / fibrosis in the context of IBD, CD and UC

Research Team: Neil McCarthy, Sean Carlson

Lead Contact: Neil McCarthy

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Last updated 17/04/2026